# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "phoenics" in publications use:' type: software license: GPL-3.0-only title: 'phoenics: Pathways Longitudinal and Differential Analysis in Metabolomics' version: '0.6' identifiers: - type: doi value: 10.32614/CRAN.package.phoenics abstract: Perform a differential analysis at pathway level based on metabolite quantifications and information on pathway metabolite composition. The method, described in Guilmineau et al (2025) is based on a Principal Component Analysis step and on a linear mixed model. Automatic query of metabolic pathways is also implemented. authors: - family-names: Guilmineau given-names: Camille email: camille.guilmineau@inrae.fr - family-names: Servien given-names: Remi email: remi.servien@inrae.fr orcid: https://orcid.org/0000-0003-1270-1843 - family-names: Vialaneix given-names: Nathalie email: nathalie.vialaneix@inrae.fr orcid: https://orcid.org/0000-0003-1156-0639 preferred-citation: type: article title: 'phoenics: a novel statistical approach for longitudinal metabolomic pathway analysis' authors: - family-names: Guilmineau given-names: Camille email: camille.guilmineau@inrae.fr - family-names: Tremblay-Franco given-names: Marie - family-names: Vialaneix given-names: Nathalie email: nathalie.vialaneix@inrae.fr orcid: https://orcid.org/0000-0003-1156-0639 - family-names: Servien given-names: Rémi journal: BMC Bioinformatics year: '2025' volume: '26' start: '105' repository: https://r-serv.r-universe.dev commit: d2537f0f96478d5f961848606ccc0ef01aa8b4c8 url: https://forge.inrae.fr/panoramics/phoenics date-released: '2025-08-19' contact: - family-names: Servien given-names: Remi email: remi.servien@inrae.fr orcid: https://orcid.org/0000-0003-1270-1843